The rye genome /
This book celebrates the dawn of the rye genomics era with concise, comprehensive, and accessible reviews on the current state of rye genomic research, written by experts in the field for students, researchers and growers. To most, rye is the key ingredient in a flavoursome bread or their favourite...
| Other Authors: | , |
|---|---|
| Format: | Book |
| Language: | English |
| Published: |
Cham :
Springer,
[2021]
Cham, Switzerland : [2021] |
| Series: | Compendium of plant genomes
Compendium of plant genomes |
| Subjects: |
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| 245 | 0 | 4 | |a The rye genome / |c M. Timothy Rabanus-Wallace, Nils Stein, editors |
| 264 | 1 | |a Cham : |b Springer, |c [2021] | |
| 264 | 1 | |a Cham, Switzerland : |b Springer, |c [2021] | |
| 264 | 4 | |c ©2021 | |
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| 490 | 1 | |a Compendium of Plant Genomes | |
| 490 | 1 | |a Compendium of plant genomes, |x 2199-479X | |
| 505 | 0 | |a Chapter 1. Economic and Academic Importance of Rye -- Chapter 2. Hybrid Rye Breeding -- Chapter 3. Rye Cytogenetics and Chromosome Genomics -- Chapter 4. The B Chromosome of Rye -- Chapter 5. Dissection of the Rye Genome by the Gametocidal System -- Chapter 6. Evolution and Domestication of Rye -- Chapter 7. Assembling the Rye Genome -- Chapter 8. The Gene and Repetitive Element Landscape of the Rye Genome -- Chapter 9. Bridging the Genotype-Phenotype Gap for Precision Breeding in Rye -- Chapter 10. Genomics of Self-Incompatibility and Male-Fertility Restoration in Rye -- Chapter 11. Genetics and Genomics of Stress Tolerance | |
| 505 | 0 | |a Intro -- Preface to the Series -- Preface -- Contents -- Contributors -- 1 Economic and Academic Importance of Rye -- Abstract -- 1.1 Background -- 1.2 World Rye Production -- 1.3 Rye End Uses -- 1.4 Academic Importance of Rye -- 1.4.1 Rye as Genetic Resource for Wheat Improvement -- 1.4.2 Rye Grain as a Source for Human Health Benefit -- 1.4.3 Abiotic Stress Tolerance of Rye -- 1.5 Conclusion -- References -- 2 Hybrid Rye Breeding -- Abstract -- 2.1 Introduction -- 2.2 Types of Varieties in Rye -- 2.3 Genetic Basis for Hybrid Breeding -- 2.3.1 Self-fertility and Self-incompatibility -- 2.3.2 Cytoplasmic-Male Sterility -- 2.3.3 Restoration of Male Fertility -- 2.3.4 Heterotic Groups -- 2.3.5 Inbreeding Tolerance -- 2.3.6 GCA/SCA Variance Relationship -- 2.3.7 Correlation Inbred Lines: Testcrosses -- 2.4 Enabling Technologies -- 2.4.1 Marker Technology -- 2.4.2 High-Throughput Phenotyping -- 2.4.3 Gene Discovery -- 2.5 Enhancing Genetic Diversity -- 2.5.1 Broadening of Central European Pools -- 2.5.2 Use of Non-adapted Material for Introgressing Single Genes -- 2.5.3 Enhancing Quantitative FHB Resistance -- 2.6 Breeding Schemes -- 2.6.1 Recurrent Selection to Improve Base Populations -- 2.6.2 Product Development -- 2.7 Preconditions for Inscription of a Variety -- 2.8 Breeding Goals -- 2.9 Breeding Progress -- 2.10 Conclusions and Future Developments -- References -- 3 Rye Cytogenetics and Chromosome Genomics -- Abstract -- 3.1 Nuclear Genome Size -- 3.2 Rye Chromosome Morphology-Comparative Studies -- 3.3 Functional Genetic Criteria for Chromosome Identification within Subtribe Triticinae -- 3.4 C-bands as Markers for Cytogenetic Analysis -- 3.5 Rye Chromosome Polymorphism and a Standard Karyotype -- 3.6 Molecular Cytogenetics - New Chromosome Markers -- 3.7 Flow Cytogenetics -- 3.7.1 Flow Karyotyping and Chromosome Sorting | |
| 505 | 8 | |a 10.4 Post-zygotic Incompatibility (Hybrid Incompatibility) -- 10.5 The Post-zygotic Reproductive Isolation (RI) and Embryo Lethality -- 10.6 Wheat-Rye Crossability -- 10.7 The Mitochondrial Basis of Cytoplasmic Male Sterility in Rye is Unknown -- 10.8 Rye as a Source of Fertility Restorer Genes for CMS-Based Hybrid Breeding Systems in Cereals -- 10.9 Expansion of the RFL-PPR and RFL-MTERF Families in Outcrossing Self-Incompatible Species -- 10.10 Possible Applications of Rye Restorer Genes in Hybrid Breeding in Other Triticeae Species -- 10.11 Conclusion -- References -- 11 Genetics and Genomics of Stress Tolerance -- Abstract -- 11.1 Introduction -- 11.2 Genetic Background of Resistance to Biotic Stresses -- 11.2.1 Diseases -- 11.2.2 Pests -- 11.3 Genetic Background of Resistance to Abiotic Stresses -- 11.3.1 Nutrient Stress -- 11.3.2 Drought -- 11.3.3 Low Temperature -- 11.4 The Genetic Background and Role of Allelochemicals in Defense Against Biotic and Abiotic Stresses -- 11.4.1 Benzoxazinoids (BXs) -- 11.5 Rye as a Source of Complex Resistance for Wheat Improvement -- References | |
| 505 | 8 | |a 3.7.2 Chromosome Genomics -- Acknowledgments -- References -- 4 The B Chromosome of Rye -- Abstract -- 4.1 Introduction -- 4.2 Rye B Chromosome Occurrence and Structural Variability -- 4.3 Rye B Chromosome Origin -- 4.4 DNA and Chromatin Composition of Rye Bs -- 4.5 Meiotic Behaviour of Rye Bs -- 4.6 Drive Mechanism of the Rye B Chromosome -- 4.7 Effects of Rye B Chromosomes -- 4.8 Morphological Changes Associated with Bs -- 4.9 Effects of Bs on Chiasma Formation and Homologous Chromosome Association -- 4.10 Transcriptional Effects of Rye B Chromosomes -- 4.11 B Chromosome Located Genes and Their Evolution -- 4.12 Potential Applications of B Chromosomes -- Acknowledgements -- References -- 5 Dissection of the Rye Genome by the Gametocidal System -- Abstract -- 5.1 The Gametocidal System -- 5.2 Dissection of Rye Chromosomes in Common Wheat by the Gametocidal System -- 5.3 Production of Dissection Lines of Rye Chromosomes -- 5.4 Types of Chromosomal Rearrangement Induced by the Gametocidal System -- 5.5 Use of the Dissection Lines -- References -- 6 Evolution and Domestication of Rye -- Abstract -- 6.1 Rye-A Remarkable Cereal -- 6.2 The Small Genus Secale -- 6.3 The Dynamic Multi-stage Model of Plant Domestication -- 6.4 Cereal Domestication in the Fertile Crescent -- 6.5 Centres of Diversity and Wild Ancestors -- 6.6 Archaeobotany Dates Onset of Cereal Domestication -- 6.7 Characteristics of Domesticated Cereals and Underlying Genes -- 6.8 Weeds and Crops -- 6.9 A Secondary Domestication Origin for Rye -- 6.10 The Peculiar Situation on the Iberian Peninsula and a Little Excursion into Linguistics -- 6.11 The Exceptional Nature of Rye Among Our Cereal Crops -- References -- 7 Assembling the Rye Genome -- Abstract -- 7.1 Introduction -- 7.1.1 Genome Assemblies -- 7.2 De Novo Assembly of Triticeae Genomes During the 2010s-A Broad Outline | |
| 505 | 8 | |a 7.2.1 The IRGSC 'Lo7' Assembly -- 7.2.2 Methodology -- 7.2.3 Results and First Findings -- 7.2.4 The Henan Agricultural University 'Weining' Assembly -- 7.2.4.1 Methodology -- 7.2.5 Results and First Findings -- 7.2.6 First Findings from the Weining Rye Reference Genome -- 7.3 Comparing Assemblies -- 7.4 Future Steps in Rye Genome Sequencing -- References -- 8 The Gene and Repetitive Element Landscape of the Rye Genome -- Abstract -- 8.1 Introduction -- 8.2 Tandem Repeats -- 8.2.1 Telomeric Repeats -- 8.2.2 Subtelomeric Repeats -- 8.3 Transposable Elements -- 8.3.1 Methods -- 8.3.1.1 How Much TEs Contribute to the Rye Genome -- 8.3.1.2 Evolutionary Dynamics of the Most Abundant LTR-Containing Retrotransposon Families in Triticeae Species -- 8.4 Gene Prediction in the Rye Genome -- 8.4.1 Methods -- 8.4.2 Results -- 8.5 Conclusion -- Acknowledgments -- References -- 9 Bridging the Genotype-Phenotype Gap for Precision Breeding in Rye -- Abstract -- 9.1 Introduction -- 9.1.1 Genomics in the Overlooked Cereal is Coming of Age -- 9.1.2 Cross-Pollination-Challenge and Opportunity -- 9.1.3 Unlocking Genetic Diversity in Rye -- 9.2 Mapped Major Genes-The Peak of an Iceberg -- 9.2.1 Agronomic Traits -- 9.2.2 Abiotic Stress Tolerance -- 9.2.3 Disease Resistance -- 9.2.4 Grain Quality -- 9.3 QTL Mapping in Rye Hybrids-The Gene Discovery Tool -- 9.3.1 Agronomic Traits -- 9.3.2 Disease Resistance -- 9.3.3 Abiotic Stress Tolerance -- 9.3.4 Grain Quality -- 9.4 Understanding the Rye Genome-The Way Forward -- 9.5 Conclusions -- Acknowledgements -- References -- 10 Genomics of Self-Incompatibility and Male-Fertility Restoration in Rye -- Abstract -- 10.1 Self-Incompatibility (SI)-Cell-to-Cell Communication for Fertilisation Control -- 10.2 Managing S and Z Diversity in Rye Breeding Programs -- 10.3 Floral Architecture in Rye Supports Outcrossing and Wind Pollination | |
| 520 | |a This book celebrates the dawn of the rye genomics era with concise, comprehensive, and accessible reviews on the current state of rye genomic research, written by experts in the field for students, researchers and growers. To most, rye is the key ingredient in a flavoursome bread or their favourite American whisky. To a farmer, rye is the remarkable grain that tolerates the harshest winters and the most unforgiving soils, befitting its legacy as the life-giving seed that fed the ancient civilisations of northern Eurasia. Since the mid-1900s, scientists have employed genetic approaches to better understand and utilize rye, but only since the technological advances of the mid-2010s has the possibility of addressing questions using rye genome assemblies become a reality. Alongside the secret of its unique survival abilities, rye genomics has accelerated research on a host of intriguing topics such as the complex history of rye's domestication by humans, the nature of genes that switch fertility on and off, the function and origin of accessory chromosomes, and the evolution of selfish DNA | ||
| 588 | |a Description based on print version record | ||
| 588 | 0 | |a Online resource; title from PDF title page (SpringerLink, viewed November 12, 2021) | |
| 596 | |a 22 | ||
| 650 | 0 | |a Agriculture | |
| 650 | 0 | |a Plant breeding | |
| 650 | 0 | |a Plant genetics | |
| 650 | 0 | |a Rye |x Genetics | |
| 650 | 0 | |a Rye |x Genome mapping | |
| 650 | 6 | |a Seigle |x Cartes chromosomiques | |
| 650 | 6 | |a Seigle |x Génétique | |
| 650 | 7 | |a Genètica vegetal |2 thub | |
| 650 | 7 | |a Rye |x Genetics |2 fast | |
| 650 | 7 | |a Sègol |2 thub | |
| 655 | 0 | |a Electronic books | |
| 655 | 4 | |a Electronic books | |
| 655 | 7 | |a Llibres electrònics |2 thub | |
| 700 | 1 | |a Rabanus-Wallace, M. Timothy, |e editor |? UNAUTHORIZED | |
| 700 | 1 | |a Rabanus-Wallace, M. Timothy, |e editor | |
| 700 | 1 | |a Stein, Nils, |e editor | |
| 776 | |z 3-030-83382-8 | ||
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| 830 | 0 | |a Compendium of plant genomes |x 2199-479X | |
| 830 | 0 | |a Compendium of plant genomes | |
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